this post was submitted on 21 Apr 2024
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The number one cause of that happening is cooking the seeds. But if you are really sure that's not it, then it might be that you are using in some other job like milling/pressing, or some critter is eating them all, or it might be the bug that causes seeds to become unavailable once stored (but I'm pretty sure that has already been patched time ago).
What you can try is selecting a plump helmet spawn and make the camera follow it to see where it ends up going.
As of last year the bug was where keeping seeds in a bag meant that a dwarf would take the whole bag of seeds to plant one helmet. That would cause all the other seeds in the bag to be unavailable and would cancel all the plant orders. I was still setting up quantum stockpiles to deal with this one.