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What are some key differences?
It uses libp2p
I've never used Yggdrasil but it looks like a standalone project. It also appears have a smaller team and a little less funding but don't know for sure.
Fair, Yggdrasil is mainly intended for research in internet-scale routing through a mesh network and less as a finished product.
Never heard of libp2p before, but apparently it's used by IPFS? Looks pretty interesting indeed.