Knowing nothing about hardware design myself, maybe you might have better luck with risc-v since it's open source, vs x86-64.
https://en.m.wikipedia.org/wiki/RISC-V
I know siFive has some boards that I think are for sale, that could run linux. you might be able to find datasheets for the risc-v implementation if you have interest in trying to design your own CPU/board etc.